Microbial emergences in Devonian and Permian cherts
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microbial emergences
Silicified microbes in chert are often seen as more or less stratified dark layers extending nearly horizontally, as in Fig.1 above and below. Also they may be found arranged as brightly coloured laminated stacks in transparent chert or on layered boulders known as stromatolites, for example. Bizarre shapes emerging from the strata are conspicuous exceptions (Fig.1).
(See also Rhynie Chert News 67). 

Fig.1: Rhynie chert with slightly inclined microbial layers extending far beyond the picture frame, beset with emergences; later formed levels of watery suspensions in between.
Width 17mm.

The level stacks between the emergences indicate the horizontal direction during silicification. They also indicate that not all water turned into silica gel at once. First, a thin coating of silica gel, now seen as bluish chalzedony, had covered every dark aggregation of microbes. Fluid silica suspensions, stained black possibly by dead microbes, accumulated in water pockets left in between, where they now appear as litte "ponds". Water pockets still remaining after subsequent silicification got a lining of glittering quartz crystals.

microbial emergences
Fig.2 (left): Rhynie chert with tilted microbial layer beset with emergences separated from later grown quartz crystals by a thin yellow boundary. Width 11mm.

A bigger water pocket left after silicification and more glittering quartz is seen in Fig.2. The microbial layer bearing the emergences is much tilted there. (The horizontal direction is indicated by the small level layer in the corner below right.) Instead of a light-coloured coating around the emergences as in Fig.1, the ones in Fig.2 are distinguished by a thin mineral cover seen as a rugged yellow line on this cut face. The quartz crystals instead of chalzedony between the emergences indicate slower silicification than in Fig.1.

Fig.3 (below): Permian chert consisting of clear chalzedony with microbial formations and mineral precipitates (from the "Maggot stone" site, Haenichen, Saxony, Germany.)
Width 3.5mm.
microbial formations




Part of what is seen here can be understood by starting interpretation at the bottom of this image. There is a laminated stack of microbial layers, probably thin sheets of some blue-green alga, damaged with holes. Apparently not affected by the damage below, emergences are seen standing perpendicular to the layer surface.
The question arises why the microbes occasionally change their mode of aggregation from flat sheets to emergences arising from them. Similar phenomena are well known from myxobacteria and slime moulds.
Although some questions must remain without an answer here, the succession of events which brought about the confusing structure in Fig.3 can roughly be reconstructed:
First came the stack of thin microbial sheets grown in water, now stained yellow and red owing to later precipitation of iron oxides. Emergences of various shapes are seen arising from the uppermost sheet. They seem to have contributed to the formation of brown granular aggregates and clear silica gel enclosing them. The large water-filled cavities still left between the gel were free for another round of silicification which produced the clouds of bright yellow dots. Later, tiny glittering quartz crystals, faintly visible now, grew slowly in two remaining water pockets amidst the yellow clouds.
The enigmatic holes must have been eaten into the stack of sheets while it was not yet silicified. An alternative idea of a creature simply squeezing through the stack would imply deformations of the sheets but there are none. This is one of a few more examples of creature effects seen in cherts without the creature showing up.
Finally, the holes like everything else, except the quartz crystals, had turned into solid chalzedony.
Samples:
Fig.1: Rh15/63, (0.62kg, obtained from Barron in 2012, here Part1);  Fig.2: Rh10/8 (0.45kg, found in 2004, here Part2);  Fig.3: H/293 (1.52kg, found in 2000 at Hänichen, Saxony, cut into 6 parts, here Part5;

H.-J. Weiss    2019
146
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